Available software
Scientific Software
| Software | Version | PATH | Info | Availability |
|---|---|---|---|---|
| VISIT | 3.1.4 | /usr/local/visit | add setenv LIBGL_ALWAYS_INDIRECT y |
master only |
| cmake | 3.13.4-1 | cmake | all | |
| Matlab (CC licence) | R2015a | /opt/matlab/MATLAB_CC/R2015a/bin/matlab | should be used via modules : module load matlab/2015a-CC | all |
| Matlab (CC licence) | R2022b | /soft/matlab/MATLAB_CC/R2022b/bin/matlab | should be used via modules : module load matlab/2022b-CC | all |
| Singularity | 3.7.1 | singularity | all | |
| Julia | 1.9 | /soft/julia/julia-1.9.3.sif | should be used via modules : module load julia/1_9 | all |
| root | 6.22.06 | root | installed inside /opt/cern_root | all |
| sagemath | 9.1 | /soft/sagemath/sagemath_latest.sif | Singularity container You could launch directly with path or use a module module load sagemath/9_1 |
all |
| MESA | r15140 | /soft/mesa/mesa-r15140 | http://mesa.sourceforge.net/starting.html | all |
| sextractor | 2.19.5 | sextractor | all | |
| sixte | 2.7.1 | /soft/simput/ | export SIMPUT=/soft/simput/ && export SIXTE=/soft/simput/ && . ${SIXTE}/bin/sixte-install.sh |
all |
| HEASoft | 6.30.1 | /soft/heasoft/ | export HEADAS=/soft/heasoft/heasoft-6.30.1/x86_64-pc-linux-gnu-libc2.28/ && . $HEADAS/headas-init.sh |
all |
| OSA | 11.2 | /soft/osa | OSA_SINGULARITY_IMAGE=/soft/osa/integralsw-osa-11.2-2-g667521a3-20220403-190332.sif REP_BASE_PROD=/soft/osa/icdata | all |
| DS9 | 10.8.4.1 | /soft/ds9 | all |
Python
| Python | Version | PATH | Info | Availability |
|---|---|---|---|---|
| Python | 2.7.16 | python | all | |
| Python | 3.7.3 | python3 | all | |
| gdl | 0.9.9-10 | python3 | all | |
| ipython | ipython & ipython3 | all | ||
| numpy | 1.16.2-1 | python3 | all | |
| scipy | 1.1.0-7 | python3 | all | |
| matplotlib | 3.0.2-2 | python3 | all | |
| scython | 0.29.2-2 | python3 | all | |
| h5py | 2.8.0-3 | python3 | all | |
| mpi4py | 2.0 | python3 | all | |
| PyMultinest | 2.11 | python3 | all | |
| Anaconda | 4.9.2 | /soft/anaconda3 | eval "$(/soft/anaconda3/bin/conda shell.bash hook)" | all |
Compiler
| Compiler | Version | PATH | Info | Availability |
|---|---|---|---|---|
| ifort, icc, icpc | Intel Composer XE 2020 | source /opt/intel/bin/compilervars.sh intel64 | all | |
| gcc | 8.3.0 | gcc | all | |
| gfortran | 8.3.0 | gfortran | all | |
| gdl | 0.9.9-10 | gdl | IDL compatible incremental compiler | all |
| idl | 8.5 | idl | IDL compiler | all |
Debuggers
| Debugger | Version | PATH | Info | Availability |
|---|---|---|---|---|
| gdb | 8.2.1-2 | gdb | all | |
MPI
| MPI | Version | PATH | Info | Availability |
|---|---|---|---|---|
| openmpi | 3.1.3 | mpirun, mpicc | default | all |
| openmpi | 4.1.0 | /soft/openmpi4 | compiled with intel composer XE | all |
| openmpi | 3.1.6 | /soft/openmpi/openmpi-3 | module load openmpi/3.1.6 | all |
| openmpi | 1.10.7 | /soft/openmpi/openmpi-1 | module load openmpi/1.10 | all |
| openmpi | 2.1.6 | /soft/openmpi/openmpi-2 | module load openmpi/2.1 | all |
Libraries
| libraries | Version | Availability |
|---|---|---|
| lapack | 3.8.0-2 | all |
| fftw | 3.3.8-2 | all |
| gsl | 2.5 | all |
| atlas | 3.10.3 | all |
| hdf5 | 1.10.4 | all |
| boost | 1.67.0.1 | all |
| CCfits | 2.5 | all |
| CFITSIO | 3.450 | all |
| MultiNest | 3.10 | all (export LD_LIBRARY_PATH=/soft/multinest/MultiNest/lib:$LD_LIBRARY_PATH) |
Anaconda
Anaconda is available on the cluster. To enable conda type eval "$(/soft/anaconda3/bin/conda shell.bash hook)" in a shell.
| env | about |
|---|---|
| fermi | Fermi-LAT telescope analysis tools |
Modules
Some software are available via module system. This allow to run/choose a
particular software installed in specific PATH.
Here are the basic commands :
- module avail : allow to see available software
- module load
<software name>: load this software - module unoad
<software name>: unload software
You could see full documentation here : man module
While this works perfectly in the interactive session, one should probably add
. /etc/profile.d/modules.sh
before module load command in your batch scripts.
List of software available via module :
- matlab 2015a CC
- OpenMPI (1.10 and 3.1.6)